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Chapter 1 Web Search Terms
These terms may be used to track current Internet addresses of sites referenced in this chapter using search engines.
| ACEDB |
Database management system for genetic information of an organism. |
| BLAST and FASTA |
Tools for fast searches of databases for similar sequences. |
| CLUSTALW and T-COFFEE |
Examples of multiple sequence alignment programs. |
| DDJP DNA |
DataBank of Japan. |
| EBI |
European Bioinformatics Institute. |
| EMBL |
European Molecular Biology Organization and sequence databases. |
| ENSEMBL |
The genome server at the European Bioinformatics Institute. |
| ENTREZ |
Search engine for GenBank and PubMed. |
| JIPID |
Japan International Protein Information Database. |
| MIPS |
Munich Center for Protein Sequences. |
| NCBI |
National Center for Biotechnology Information, home of GenBank. |
| PHRED, PHRAP, and CONSED |
Tools for base calling and sequence editing in DNA sequence data. |
| PIR |
Protein Identification Resource/International Protein Sequence Database. |
| PROSITE |
Databases of conserved patterns in proteins related to activity. |
| PSI-BLAST |
BLAST tool that searches sequence databases for conserved domains. |
| RDP |
Ribosomal RNA database. |
| TIGR |
The Institute of Genomics Research. |
| UNIGENE |
Database of predicted set of genes for an organism based on alignment of partial DNA copies of mRNA sequences (expressed sequence tag or EST sequences). |
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