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Chapter 3 Web Search Terms
Using dot matrix, sequence alignment, or pair-wise sequence alignment as search phrases is usually sufficient to find a current Web site with information, resources, or programs for performing pair-wise sequence alignment. A number of the more stable Web sites are shown in Table 3.1 and throughout the text. Often, a visit to the investigator's Web site will be fruitful. Some additional search terms are listed below.
| BCM searchlauncher |
Baylor College of Medicine pair-wise sequence alignment on the Web. |
| DNA Strider |
A Macintosh suite of sequence analysis programs that includes dot matrix (see Marck 1988). |
| DOTTER |
Dot matrix using UNIX or Linux X-Window. |
| EMBOSS |
The European Molecular Biology Open Software Suite (EMBOSS) of programs that includes dot matrix and pair-wise sequence alignment programs. These must be run on the UNIX command line, but support is provided for building Web page interfaces (see Chapter 12). |
| FASTA |
University of Virginia sequence alignment on the Web using Pearson's FASTA suite. |
| PipMaker |
Alignment of long sequences and genomes on the Web with dot matrix-like display. |
| SSV |
Pair-wise chromosome viewer at Stanford University. |
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