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Table 8.1. RNA databases and RNA analysis Web sites^a

Site or Resource

Web address

Reference

Comparative RNA Web site
(Gutell laboratory)

http://www.rna.icmb.utexas.edu/

see Web site

mfold minimum energy RNA configuration

http://www.bioinfo.rpi.edu/applications/mfold/

Zuker et al. (1991)

RNA secondary structures, Group I introns, 16S rRNA, 23S rRNA, covariation analysis

http://www.rna.icmb.utexas.edu

Gutell (1994); Schnare et al. (1996 and references therein)

RNA structure database

http://www.rnabase.org/

see Web page

snoRNA database for S. cerevisiae

http://rna.wustl.edu/snoRNAdb/

Lowe and Eddy (1999)

tRNAscan-SE search server

http://www.genetics.wustl.edu/eddy/tRNAscan-SE/

Lowe and Eddy (1997)

Vienna RNA package for RNA

http://www.tbi.univie.ac.at/

Hofacker et al. (1998)

^a See Web Search Terms for more sites.

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