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Table 10.8. Web sites for predicting structural features of a query sequence

Site

Web address

Description

Reference

Modeller

http://www.salilab.org/
modeller/modeller.html

Salilab dynamic programming alignment of sequences and structures and molecular dynamics methods

Sali et al. (1995)

Swiss-model

http://www.expasy.ch/swissmod/
SWISS-MODEL.html

sequence alignment of query with sequences of known structure

Peitsch (1996)

Whatif

http://www.cmbi.kun.nl/whatif/

flexible molecular graphics rendering of models

Rodriguez et al. (1998)

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